References ManagementGuide

Torrent Suite Software space on Ion Community

Update Reference Library Indices

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When you upgrade your Torrent Suite Software from a version earlier than 3.0, you must rebuild your reference indices. This process can take a few hours for larger reference genomes. Your users should not submit data analysis jobs while the reference indices are being rebuilt.

Follow these steps to rebuild your reference genome indices:

Log in with an ionadmin account.
Ensure that users do not submit analyses while the rebuild is in progress.
Click the Admin gear menu References option:
Click the Rebuild All Now button:

The TMAP index version used in 3.x and 4.x releases is tmap-f3.

Contents

References Management Guide

Work with reference files

Upload a New Reference File

Delete a Reference Sequence

Download an Ion Reference File

Details about the Ion hg19 Reference

Work with Obsolete Reference Sequences

Work with BED files

Target Regions Files and Hotspot Files

Manage Target Regions Files and Hotspot Files

BED File Formats and Examples

Work with DNA barcodes

Manage DNA Barcodes and DNA Barcode Sets

Work with reference library indices

Update Reference Library Indices

Work with test fragments

Work with Test Fragments