Torrent Suite SoftwareAdministration Guide

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Torrent Suite Software space on Ion Community

Administration Guide TOC

Update Server

Enter the Management Actions section with the admin gear menu Configure selection:

Scroll down to the Database Administration section, and click the Admin Interface link:

If you are prompted to log in, use your ionadmin account.

Update your Torrent Suite Software

Update to your Torrent Suite Software cause the Torrent web services to restart. Make sure no analysis jobs are running on the server or are queued to run.

If you have old references present in the Obsolete References section, this triggers a warning to rebuild your references. Rebuild is not required if your references are already using the index tmap-f3 . The upgrade to a 3.x release does require rebuilding your reference indices only if you upgrade from a release earlier than 2.2.

Follow these step to update your Torrent Suite Software:

1. Log in with your ionadmin account.
2. Select the Admin gear menu Configure option, click the Admin Interface link in the Database Administration section, and scroll down on the Management Actions section.
3. Click the Update Server link:
   
   
   
   
   
   The Software Versions table, in the second column header, lists the current version of Torrent Suite Software ("4.0" in this example. The Available column shows which packages are available for update and their versions :
   
   
   
   
   
   
   
   

4. Below the Software Versions list is the update area. If no updates are available, this section is titled "No updates":
   
   

   If you click the Check button, the following appears:

   
   
   
   
   If updates are available, this section is titled "Available":
   
   
   
   Click Update Server to being the update process. On the confirmation screen, click OK .

   When you see the following text, the update has finished.

                Verifying ion-gpu
   Verifying ion-analysis
   Verifying ion-alignment
   Verifying ion-pipeline
   Verifying tmap
   Verifying samtools
   Verifying ion-rsmts
   Verifying ion-samita
   Verifying ion-torrentr
   Verifying ion-plugins
   Verifying ion-pgmupdates
   Verifying ion-docs
   Verifying ion-referencelibrary
   Verifying ion-sampledata
   Verifying ion-publishers
   Verifying ion-onetouchupdater
   Verifying ion-dbreports
   ========================================================
   TSconfig software update process completed successfully
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   ===============================================
   Torrent Suite Update is done
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5. After the Torrent Suite Software update is done, please verify the version number in the Admin gear menu About tab. The version number should now reflect the current release:

   

Disable updates to your Torrent Suite Software

Click the Lock current TS software version checkbox to prevent accidental updates to your software:

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