Torrent Browser Analysis Report Guide
Torrent Suite Software space on Ion Community
Run RecognitION Plugin
The Run RecognitION plugin allows you tosubmit your best runs to the Ion Community leaderboards.The leaderboards are available on the Ion Community, and are organized in leagues according to chip type:
Your Torrent Suite software must be at least version 1.5.1 to use this plugin.
Run the RunRecognitION Plugin
Follow these steps to run to the RunRecognitION plugin:
-
Go to the report page for your run. Scroll down to the Plugin Summary section, and click
Select plugins to run
.
-
In
Select a plugin
, click
RunRecognitION
:
The leaderboard for your chip type is shown, with a message indicating where your ranks among the leaderboard runs.
Submit your run to the RunRecognitION leaderboard
Follow these steps to submit a candidate run to the leaderboard:
-
Go to the report page for your run. Run the RunRecognitION plugin, as described in
Run the RunRecognitION Plugin
.
The Run RecognitION leaderboard is displayed for your chip type. -
Scroll to the Ion Community Login section below the leaderboard. If you do not have an Ion Community account, click
create an account
to register. Enter your community user name and password.
- Optionally enter the any of this information about your run:
- Your site name
- The reference genome used in this run
-
The application type for this run
-
Below the information fields, click
Terms and Conditions
and carefully read that information. Click the checkbox "
I agree to the Terms and Conditions
".
-
Click
Submit
at the bottom of the page. If your run qualifies, it is added to the leaderboard:
What Information About Me Does RunRecognitION Make Public?
If your run is published to the leaderboard, your Ion Community user name and avatar are visible to other members of the community.
Torrent Browser Analysis Report Guide
Run Report Metrics
Run Metrics Overview
Run Report Metrics Before Alignment
Run Report Metrics on Aligned Reads
Barcode Reports
Test Fragment Report
Report Information
Output Files
Plugin Summary
Assembler SPAdes Plugin
Coverage Analysis Plugin
ERCC Analysis Plugin
FileExporter Plugin
FilterDuplicates Plugin
IonReporterUploader Plugin
See The Ion Reporter™ Software Integration Guide
Run RecognitION Plugin
SampleID Plugin
TorrentSuiteCloud Plugin
Torrent Variant Caller Plugin
Torrent Variant Caller Parameters
Example Torrent Variant Caller Parameter File
Torrent Variant Caller Output
The Command-Line Torrent Variant Caller
Ion Reporter™ Software Features Related to Variant Calling
Integration with TaqMan® and PCR